Through the Looking Glass – a new world of proteins enabled by chemistry (#118)
The ribosomally-translated protein molecules found in Nature are homochiral. They made up of L-amino acids and the achiral amino acid glycine. Modern chemical ligation methods enable the total synthesis of unnatural protein molecules made up entirely of D-amino acids and glycine.[1-3] These D-proteins have a folded structure that is the mirror image of their counterparts found in Nature. The prototypical synthesis of a mirror image enzyme molecule demonstrated reciprocal chiral substrate specificity.[4,5] Mirror image protein molecules have a variety of uses.[6] Crystallization of racemic protein mixtures consisting of D-protein and L-protein enantiomers has greatly facilitated the solution of novel protein X-ray structures.[7,8] Most importantly, D-proteins enable ‘mirror image drug discovery’, to identify unique therapeutic leads from chiral compound libraries.[9] D-Protein molecules themselves are good candidates for use as human therapeutics: they are resistant to proteolytic digestion, are longer-lived in vivo, and are non-immunogenic.[10] To illustrate the properties and applications of mirror image protein molecules, I will describe the application of total synthesis to the creation of uniquely chemical D-protein antagonists of an important therapeutic target.[11]
- Constructing proteins by dovetailing unprotected synthetic peptides: backbone engineered HIV protease. M. Schnölzer, S. Kent. Science, 256, 221-225 (1992).
- Synthesis of proteins by native chemical ligation. Philip E. Dawson, Tom W. Muir, Ian Clark-Lewis, Stephen B.H. Kent. Science, 266, 776-779 (1994).
- Native chemical ligation in protein synthesis and semi-synthesis. Anne C. Conibear, Emma E. Watson, Richard J. Payne, Christian F. W. Becker. Chem. Soc. Rev., 2018, 47, 9046-9068.
- Total chemical synthesis of a D-enzyme: the enantiomers of HIV-1 protease demonstrate reciprocal chiral substrate specificity, R.C deLisle Milton, S.C.F. Milton, and S.B.H. Kent, Science, 256, 1445-1448 (1992).
- Synthesis of proteins by chemical ligation of unprotected peptide segments: mirror-image enzyme molecules D- & L-HIV protease analogues. R. deLisle Milton, Saskia Milton, Martina Schnölzer, Stephen B.H. Kent, in "Techniques in Protein Chemistry IV", R. Angeletti, ed., Academic Press, New York, 1993, pp. 257-267.
- Synthesis and applications of mirror-image proteins. Katriona Harrison, Angus S. Mackay, Lucas Kambanis, Joshua W. C. Maxwell, Richard J. Payne, Nature Reviews Chemistry, 7, 383–404 (2023).
- Racemic protein crystallography. Todd O. Yeates, Stephen B.H. Kent. Ann. Review Biophysics, 41, 41–61 (2012).
- Chemical synthesis and X-ray structure of a heterochiral {D-protein antagonist plus VEGF-A} protein complex by racemic crystallography. Kalyaneswar Mandal, Maruti Uppalapati, Dana Ault-Riché, John Kenney, Joshua Lowitz, Sachdev Sidhu, Stephen B.H. Kent. Proc Natl Acad Sci USA, 109, 14779-14784 (2012).
- Identification of D-peptide ligands through mirror-image phage display. Science, 271, 1854-1857 (1996).
- A potent D-protein antagonist of VEGF-A is non-immunogenic, metabolically stable and longer-circulating in vivo. Maruti Uppalapati, Dong Jun Lee, Kalyaneswar Mandal, Hongyan Li, Les P. Miranda, Joshua Lowitz, John Kenney, Jarrett J. Adams, Dana Ault-Riché, Stephen B. H. Kent, Sachdev S. Sidhu, ACS Chemical Biology, 11, 1058-65 (2016).
- A designed bivalent D-protein potently inhibits retinal vascularization and tumor growth. Paul S. Marinec, et al., ACS Chemical Biology, 16, 548–556 (2021).